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accession-icon GSE20645
The difference of gene expression in mouse OPCs in normothermic and hypothermic culture
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
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Description

We have found that the cell yield of oligodendrocyte precursor cells (OPCs) are higher in 31.5 than in 37 not by suppression of apoptosis but by enhancement of proliferation.

Publication Title

Hypothermia-induced increase of oligodendrocyte precursor cells: Possible involvement of plasmalemmal voltage-dependent anion channel 1.

Sample Metadata Fields

Specimen part

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accession-icon GSE110515
Gene expression data of iPSCs reprogrammed and/or maintenanced with 3i
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

RNA exracted from 3i (-)/(+) and (+)/(+) iPSCs was hybridized to Affymetrix microarray.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE17597
Gene expression profile of murine bone marrow endosteal populations
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE40694
KSP-positive or -negative cells derived from mouse embryonic stem cells
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
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Description

The goals and objectives of this study was to characterize KSP-positive cells derived from mouse embryonic stem cells. KSP is a specific cadherin expressed in renal tubular cells, so it was predicted that KSP-positive cells have characteristics of renal tubular cells.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE17569
Gene expression profile of murine bone marrow endosteal populations (1)
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
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Description

A subset of osteoblasts functions as a key component of the hematopoietic stem cell niche. But it is still unclear that the precise cellular and molecular contribution of endosteal cell populations on the HSC supportive microenvironment. We purified the endosteal cells and subdivided them into mesenchymal progenitor cells (MPCs: ALCAM(-)Sca-1(+)) and two osteoblast populations (ALCAM(-)Sca-1(-) and ALCAM(+)Sca-1(-)). In this study, to clarify the characteristics of these fractionated cells in detail, gene expression analysis were performed using the GeneChip Mouse Genome Array 430 2.0 (Affymetrix).

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE17570
Gene expression profile of murine bone marrow endosteal populations (2)
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon

Description

A subset of osteoblasts functions as a key component of the hematopoietic stem cell niche. But it is still unclear that the precise cellular and molecular contribution of endosteal cell populations on the HSC supportive microenvironment. We purified the endosteal cells and subdivided them into mesenchymal progenitor cells (MPCs: PDGF-Ra(+)Sca-1(+)) and two osteoblast populations (PDGF-Ra(-)Sca-1(-) and PDGF-Ra(+)Sca-1(-)). In this study, to clarify the characteristics of these fractionated cells in detail, gene expression analysis were performed using the GeneChip Mouse Genome Array 430 2.0 (Affymetrix).

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE50225
Wild-type and Mecp2 -/y callosal projection neurons
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

Mutations of the transcriptional regulator Mecp2 cause the X-linked autism spectrum disorder Rett syndrome (RTT), and Mecp2 has been implicated in several other neurodevelopmental disorders. To identify potential target genes regulated directly or indirectly by MeCP2, we performed comparative gene expression analysis via oligonucleotide microarrays on Mecp2-/y (Mecp2-null) and wild-type CPN purified via fluorescence-activated cell sorting (FACS).

Publication Title

Reduction of aberrant NF-κB signalling ameliorates Rett syndrome phenotypes in Mecp2-null mice.

Sample Metadata Fields

Specimen part

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accession-icon GSE16761
Expression data from activated bone marrow-derived dendritic cells (BMDCs)
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
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Description

genes regualted by LPS or LPS+cAMP stimulation in BMDCs

Publication Title

Cyclic adenosine monophosphate suppresses the transcription of proinflammatory cytokines via the phosphorylated c-Fos protein.

Sample Metadata Fields

Specimen part

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accession-icon GSE13061
Comparative transcriptomic analysis of BA- or BL-
  • organism-icon Mus musculus
  • sample-icon 20 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Bifidobacteria can protect from enteropathogenic infection through production of acetate.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE17158
Expression and DNA methylation profiling of ntTS and TS cells
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line

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...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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