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accession-icon GSE80975
Transcriptome Analysis of the Impact of Dexamethasone on the Immune Response in Mice with Pneumocystis Infection
  • organism-icon Mus musculus
  • sample-icon 14 Downloadable Samples
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Description

Pneumocystis pneumonia (PCP) is an opportunistic infectious disease prevalent in immunosuppressive host. Corticosteroids treatment is the most significant risk factor for HIV-negative patients with PCP, though little is known about how corticosteroids alters the host defense against Pneumocystis infection.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE107382
Gene expression data from retina of Babl/c mouse under white LED light exposure
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
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Description

The widely used white light-emitting diodes (LED) deliver higher levels of blue light than do conventional domestic light sources. The high intensity of blue component is the main source of concern about the health risks of LED with respect to their light-toxicity to the retina. White LED light with higher correlated color temperature (CCT) is more likely to cause retinal injury in mice, significantly reducing the number of ONL nuclei, however apoptosis pathway may not be the only mechanism.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE17184
ConA-induced fulminant hepatitis in a mouse model
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
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Description

The goal of this experiment was to investigate the early mechanisms of human fulminant hepatitis through ConA-induced hepatitis model.Early diagnosis and interventions are important for patients with fulminant hepatitis and gene expression may be pivotal in the early diagnosis.

Publication Title

Genes related to the very early stage of ConA-induced fulminant hepatitis: a gene-chip-based study in a mouse model.

Sample Metadata Fields

Sex, Specimen part, Time

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accession-icon GSE27713
Genome-wide analysis of gene expression patterns in mir-122 knockout mice livers
  • organism-icon Mus musculus
  • sample-icon 7 Downloadable Samples
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Description

To invesigate the physiology roles of mir-122 in liver, we performed expression profiling of mir-122 knockout mice and the control B6/129 mice.

Publication Title

No associated publication

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE18218
Expression data from AFB1-treated GNMT knockout mice
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
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Description

We report that liver nodules from 5/8 (62.5%) male and 4/5 (80%) female Gnmt-/- mice were diagnosed as having HCC.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE38251
Expression data of 4T1 mammary cancer cells cultured in MSC-conditioned medium or co-cultured with MSCs
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

4T1 mammary cancer cells exihibit higher proliferation and metastatic ability when cultured in conditioned medium from mesenchymal stem cells . Also, co-implantation with MSCs, 4T1 tumors show higher tumor growth and metastasis.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE23937
Expression data from GNMT knockout mice cerebral cortex
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

We report that Gnmt-/- mice have abnormal behavior including spontaneous locomotion activity, PPI, TST and FST. Microarray analysis showed that genes expression profiles in male Gnmt -/- mice

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE15736
Expression data from Smad4-siRNA bEnd3 cells
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

TGF-beta/Smads signaling plays important roles in vascular integrity. To identify potential Smad4 target genes in brain endothelial cells that control cerebrovascular integrity, the microarray assay was performed to compare the gene expression profiles of bEnd3 transfected with Smad4-siRNA and control-siRNA.

Publication Title

Endothelial Smad4 maintains cerebrovascular integrity by activating N-cadherin through cooperation with Notch.

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE57642
Expression data from intestinal epithelial cells (IECs)
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE57641
Expression data from intestinal epithelial cells (IECs) [Mouse430_2 array]
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon

Description

Polycomb group (PcG) proteins are epigenetic silencers whose dysregulation is frequently linked to cancer via mechanisms that remain unclear. Using conditional knock-out mice in a colitis-associated colorectal cancer (CAC) model, we found that Bmi1 and Mel18 are important initiation and maintenance factors during CAC tumorigenesis. Epithelial depletion of both Bmi1 and Mel18, but not either gene alone, significantly reduces tumor growth and multiplicity.

Publication Title

BMI1 and MEL18 Promote Colitis-Associated Cancer in Mice via REG3B and STAT3.

Sample Metadata Fields

Specimen part

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...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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