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accession-icon GSE28477
Expression data from mouse skin
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
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Description

Winged bean (WB), Psophocarpus tetragonolobus, is a tropical legume, the potential of which is not yet been understood. We found that a 5 week-oral administration of WB seed extract inhibited wrinkle formation induced by repeated tape stripping (TS), which is a model of lichenification in human chronic eczematous dermatitis.

Publication Title

Effect of oral intake of winged bean extract on a skin lichenification model: evaluation by microarray analysis.

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

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accession-icon GSE18600
Importance of histone demethylation in adipogenic differentiation and function
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

FAD-dependent lysine-specific demethylase-1 regulates cellular energy expenditure.

Sample Metadata Fields

Specimen part

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accession-icon GSE18598
Differentiating 3T3-L1 adipocytes, introduced with siRNA against aof2 and rfk genes, or treated with tranylcypromine
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
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Description

Adipogenic differentiation and metabolic adaptation are initiated through transcriptional and epigenetic reprogramming. In particular, dynamic changes in histone modifications may play central roles in the rearrangement of gene expression patterns. LSD1 (KDM1) protein, encoded by aof2 gene, is a histone demethylase, which is involved in transcriptional regulation. Since the enzymatic activity of LSD1 is FAD (flavin adenine dinucleotide)-dependent, its effects on gene expression may be influenced by FAD availability.

Publication Title

FAD-dependent lysine-specific demethylase-1 regulates cellular energy expenditure.

Sample Metadata Fields

Specimen part

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accession-icon GSE18599
Differentiating 3T3-L1 adipocytes, introduced with siRNA against phf21a gene
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

Adipogenic differentiation and metabolic adaptation are initiated through transcriptional and epigenetic reprogramming. In particular, dynamic changes in histone modifications may play central roles in the rearrangement of gene expression patterns. BHC80 protein, encoded by phf21a gene, is a part of LSD1 histone demethylase complex and is essential for the demethylation activity.

Publication Title

FAD-dependent lysine-specific demethylase-1 regulates cellular energy expenditure.

Sample Metadata Fields

Specimen part

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accession-icon GSE16007
miR-140 deficiency effect on the chondrocytes
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

Analysis of mouse chondrocytes lacking the microRNA-140. MicroRNAs are genomically encoded small RNAs to regulate the gene expression. miR-140 shows high expression in cartilage. Results provide insight into the molecular mechanisms underlying miR-140 function in chondrocytes.

Publication Title

MicroRNA-140 plays dual roles in both cartilage development and homeostasis.

Sample Metadata Fields

Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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