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accession-icon GSE67463
Gonadal Identity in the Absence of pro-Testis Factor SOX9 and pro-Ovary Factor beta-catenin
  • organism-icon Mus musculus
  • sample-icon 29 Downloadable Samples
  • Technology Badge Icon

Description

The main goal of our study is to identify the molecular events that determine the gonadal identity in mammals. Although testis and ovary arise from a common embryonic primordium, they represent outcomes of opposing fate determination. This decision to differentiate into a testis or an ovary hinges upon the balance between two antagonizing factors, pro-testis SOX9 and pro-ovary -catenin.

Publication Title

Gonadal Identity in the Absence of Pro-Testis Factor SOX9 and Pro-Ovary Factor Beta-Catenin in Mice.

Sample Metadata Fields

Specimen part

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accession-icon GSE109842
Transcriptomes comparisons of Dhh KO, Ihh KO and Dhh/Ihh DKO ovaries
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
  • Technology Badge Icon

Description

The goal of the microarray analysis is to determine the redundant and distinct roles of Dhh and Ihh in ovarian functions

Publication Title

Reproductive, Physiological, and Molecular Outcomes in Female Mice Deficient in Dhh and Ihh.

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE42135
Expression data from preimplantation mouse embryos
  • organism-icon Mus musculus
  • sample-icon 36 Downloadable Samples
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Description

Landmark events occur in a coordinated manner during preimplantation development of the mammalian embryo, yet the regulatory network that orchestrates these events remains largely unknown.

Publication Title

An Oct4-Sall4-Nanog network controls developmental progression in the pre-implantation mouse embryo.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE53826
Expression data from bone marrow (BM) neutrophils
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

We employed GeneChip analysis to investigate the global gene expression profiles of neutrophils from BM

Publication Title

Neutrophil priming occurs in a sequential manner and can be visualized in living animals by monitoring IL-1β promoter activation.

Sample Metadata Fields

Specimen part

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accession-icon GSE6903
Expression data from high-fat diet feeded WT and LIGHT Tg mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

effect of over-expression LIGHT on T cells for the liver gene expression

Publication Title

Lymphotoxin beta receptor-dependent control of lipid homeostasis.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13335
Gene expression analysis of cells sensitive to necrosis (L929) and cells sensitive to apoptosis (NIH3T3).
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

To explore gene expression profiles of cells sensitive to necrosis (such as L929 cells) and those sensitive to apoptosis (such as NIH3T3 cells), we conducted expression microarray analysis of L929 cells and NIH3T3 cells.

Publication Title

Identification of a molecular signaling network that regulates a cellular necrotic cell death pathway.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE100015
Microarray analysis of mRNA expression in E14.5 and E16.5 mouse ovaries with and without Coup-tfII (Nr2f2)
  • organism-icon Mus musculus
  • sample-icon 14 Downloadable Samples
  • Technology Badge Icon

Description

COUP-TFII (NR2F2) is expressed in somatic cells in fetal ovary. To investigate the function of COUP-TFII , we used Cre-flox model to ablate Coup-tfII in the fetal ovaries

Publication Title

Elimination of the male reproductive tract in the female embryo is promoted by COUP-TFII in mice.

Sample Metadata Fields

Specimen part

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accession-icon GSE79194
Expression data from murine GVH-SSc skin
  • organism-icon Mus musculus
  • sample-icon 22 Downloadable Samples
  • Technology Badge Icon

Description

Murine GVH-SSc dorsal scapular skin samples were analyzed to determine the effect of IFNAR-1 inhibition on gene expression at day 14 and day 28. Gene expression in GVH-SSc skin from mice treated with a neutralizing IFNAR-1 antibody was compared to that in GVH-SSc skin from mice treated with isotype IgG, with skin from syngeneic graft controls as reference.

Publication Title

Type I IFNs Regulate Inflammation, Vasculopathy, and Fibrosis in Chronic Cutaneous Graft-versus-Host Disease.

Sample Metadata Fields

Sex

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accession-icon GSE14101
Genes regulated by Meis1 in murine Mll-AF9 leukemia cells
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon

Description

Leukemias with MLL-rearrangements are characterized by high expression of the homeo box gene MEIS1. In these studies, we knocked down Meis1 expression by shRNA lentivirus transduction in murine Mll-AF9 leukemia cells. Meis1 knockdown resulted in decreased proliferation and survival of murine Mll-AF9 leukemia cells. We also observed reduced clonogenic capacity and increased monocytic differentiation. The establishment of leukemia in transplant recipients was significantly delayed by Meis1 knockdown. Gene expression profiling of cells transduced with Meis1 shRNA showed reduced expression of genes associated with cell cycle entry and progression. shRNA mediated knockdown of MEIS1 in human MLL-fusion gene leukemia cell lines resulted in reduced cell growth. These results show that MEIS1 expression is important for MLL-rearranged leukemias and suggest that MEIS1 promotes cell cycle entry. Targeting MEIS1 may have therapeutic potential for treating leukemias expressing this transcription factor.

Publication Title

A role for MEIS1 in MLL-fusion gene leukemia.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE15181
Expression profiles of cancer cells with anchorage-independent growth ability
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 56 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Anchorage-independent cell growth signature identifies tumors with metastatic potential.

Sample Metadata Fields

Specimen part, Cell line

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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