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accession-icon GSE33516
IL-5+ and IL-5- memory Th2
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

We used microarray analysis to identify specific molecular mechanisms controlling IL-5 transcription in memory Th2 cells.

Publication Title

Eomesodermin controls interleukin-5 production in memory T helper 2 cells through inhibition of activity of the transcription factor GATA3.

Sample Metadata Fields

Specimen part

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accession-icon GSE16516
Distinct Self-renewal and Differentiation Phases in the Niche of Infrequently Dividing Hair Follicle Stem Cells
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
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Description

In homeostasis of adult vertebrate tissues, stem cells are thought to self-renew by infrequent and asymmetric divisions that generate another stem cell daughter and a progenitor daughter cell committed to differentiate. This model is based largely on in vivo invertebrate or in vitro mammal studies. Here we examine the dynamic behaviour of adult hair follicle stem cells in their normal setting by employing mice with repressible H2B-GFP expression to track cell divisions and Cre inducible mice to perform long-term single cell lineage tracing. We provide direct evidence for the infrequent stem cell division model in intact tissue. Moreover, we find that differentiation of progenitor cells occurs at different times and tissue locations than self-renewal of stem cells. Distinct fates of differentiation or self-renewal are assigned to individual cells in a temporal-spatial manner. We propose that large clusters of tissue stem cells behave as populations, whose maintenance involves unidirectional daughter-cell fate decisions.

Publication Title

Distinct self-renewal and differentiation phases in the niche of infrequently dividing hair follicle stem cells.

Sample Metadata Fields

Specimen part

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accession-icon GSE6903
Expression data from high-fat diet feeded WT and LIGHT Tg mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

effect of over-expression LIGHT on T cells for the liver gene expression

Publication Title

Lymphotoxin beta receptor-dependent control of lipid homeostasis.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE21154
Gene array data for Fas knock-out human cancer cell line and mouse liver tissue
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 7 Downloadable Samples
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Description

CD95 (also called FAS and APO-1) is a prototypical death receptor that

Publication Title

CD95 promotes tumour growth.

Sample Metadata Fields

Sex, Age, Specimen part, Cell line

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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