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accession-icon GSE67358
Promotion of pancreatic cancer metastasis by mutant p53
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon

Description

The TP53 transcription factor is frequently mutated at later stages of epithelial cancers, indicating a possible role in their invasion and metastasis. Importantly, in most cases rather than a simple loss of function p53 mutation, point mutations of p53 accumulate at the protein level and may have dominant negative functions. This study analyses gene expression differences between mice harbouring p53 mutation who do and do not develop metastasis.

Publication Title

Targeting the LOX/hypoxia axis reverses many of the features that make pancreatic cancer deadly: inhibition of LOX abrogates metastasis and enhances drug efficacy.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE27951
Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 30 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity.

Sample Metadata Fields

Age, Specimen part

View Samples
accession-icon GSE17667
Pou5f1 transcription targets in zebrafish
  • organism-icon Danio rerio
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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