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accession-icon GSE36386
ZNF335 regulates stem cell proliferation and neuronal differentiation via Trithorax complex and REST/NRSF
  • organism-icon Mus musculus
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Microcephaly gene links trithorax and REST/NRSF to control neural stem cell proliferation and differentiation.

Sample Metadata Fields

Time

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accession-icon GSE10285
Role of Transglutaminase 2 in Liver Injury via Crosslinking and Silencing of Transcription Factor, Sp1
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

Gene expression of Ethanol-treated hepatocytes from WT and transglutaminase 2 knockout mice

Publication Title

Role of transglutaminase 2 in liver injury via cross-linking and silencing of transcription factor Sp1.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13552
Gene expression changes in Jhdm2a knock-out skeletal muscle as compared to wild-type.
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

Gene expression changes in mouse skeletal muscle were assessed in wild-type and Jhdm2a null skeletal muscle in an effort to define the role of Jhdm2a in energy expenditure and metabolism.

Publication Title

Role of Jhdm2a in regulating metabolic gene expression and obesity resistance.

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE10553
BAF 250 ko ES cells series
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

To study the function of BAF250 during ES cell self renewal and differentiation

Publication Title

ES cell pluripotency and germ-layer formation require the SWI/SNF chromatin remodeling component BAF250a.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE87765
Expression data from precancerous mouse liver under PI3K signaling activation with or without Kdm3a defficiency
  • organism-icon Mus musculus
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon

Description

Epigenetic gene regulation in various oncogenic pathways is currently an important focus of cancer research. The PI3K pathway plays a pivotal role in hepatocellular carcinoma, but the significance of histone modification in the PI3K pathway-dependent hepatotumorigenesis remains unknown.

Publication Title

Impact of histone demethylase KDM3A-dependent AP-1 transactivity on hepatotumorigenesis induced by PI3K activation.

Sample Metadata Fields

Specimen part

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accession-icon GSE23505
Enhanced Pathogenicity of Th17 cells Generated in the Absence of Transforming Growth Factor- Signaling
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon

Description

CD4+ T cells that selectively produce interleukin (IL)-17, are critical for host defense and autoimmunity1-4. Crucial for T helper17 (Th17) cells in vivo5,6, IL-23 has been thought to be incapable of driving initial differentiation. Rather, IL-6 and transforming growth factor (TGF)-1 have been argued to be the factors responsible for initiating specification7-10. Herein, we show that Th17 differentiation occurs in the absence of TGF- signaling. Neither IL-6 nor IL-23 alone efficiently generated Th17 cells; however, these cytokines in combination with IL-1 effectively induced IL-17 production in nave precursors, independently of TGF-. Epigenetic modification of the Il17a/Il17f and Rorc promoters proceeded without TGF-1, allowing the generation of cells that co-expressed Rort and T-bet. T-bet+Rort+ Th17 cells are generated in vivo during experimental allergic encephalomyelitis (EAE), and adoptively transferred Th17 cells generated with IL-23 in the absence of TGF-1 were more pathogenic in this experimental disease. These data suggest a new model for Th17 differentiation. Consistent with genetic data linking the IL23R with autoimmunity, our findings re-emphasize the role of IL-23 and therefore have important implications for the development of new therapies.

Publication Title

Generation of pathogenic T(H)17 cells in the absence of TGF-β signalling.

Sample Metadata Fields

Treatment

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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