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accession-icon GSE63325
The cohesin associated factor Wapal is required for proper polycomb-mediated gene silencing
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

The cohesin-associated protein Wapal is required for proper Polycomb-mediated gene silencing.

Sample Metadata Fields

Specimen part

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accession-icon GSE63291
The cohesin offloading factor Wapal is required for proper polycomb-mediated gene silencing [array]
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon

Description

The cohesin offloading protein Wapal also acts as a polycomb factor in flies. We examined its role in transcriptional role in murine embryonic stem cells (ESCs)

Publication Title

The cohesin-associated protein Wapal is required for proper Polycomb-mediated gene silencing.

Sample Metadata Fields

Specimen part

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accession-icon GSE13093
Feeding schedule and the circadian clock shape rhythms in hepatic gene expression
  • organism-icon Mus musculus
  • sample-icon 64 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13062
The effects of temporally restricted feeding on hepatic gene expression of Cry1, Cry2 double KO mice
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
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Description

Restricted feeding impacts the hepatic circadian clock of WT mice. Cry1, Cry2 double KO mice lack a circadian clock and are thus expected to show rhythmical gene expression in the liver. Imposing a temporally restricted feeding schedule on these mice shows how the hepatic circadian clock and rhythmic food intake regulate rhythmic transcription in parallel

Publication Title

Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13060
The effects of temporally restricted feeding on hepatic gene expression
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon

Description

Temporally restricted feeding is known to impact the circadian clock. This dataset shows the effects of temporally restricted feeding on the hepatic transcriptome.

Publication Title

Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13063
Effects of extensive fasting and subsequent feeding on hepatic transcription
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

Temporally restricted feeding has a profound effect on the circadian clock. Fasting and feeding paradigms are known to influence hepatic transcription. This dataset shows the dynamic effects of refeeding mice after a 24hour fasting period.

Publication Title

Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE15969
Changes in gene expression of hMSCs and NOD/scid mouse lung after IV infusion of hMSCs
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

Quantitative assays for human DNA and mRNA were used to examine the paradox that intravenously (IV) infused human multipotent stromal cells (hMSCs) can enhance tissue repair without significant engraftment. After 2 X 106 hMSCs were IV infused into mice, most of the cells were trapped as emboli in lung. The cells in lung disappeared with a half-life of about 24 hr but < 1,000 cells appeared in 6 other tissues. The hMSCs in lung up-regulated expression of multiple genes with a large increase in the anti-inflammatory protein TSG-6. After myocardial infarction, IV hMSCs but not hMSCs transduced with TSG-6 siRNA decreased inflammatory responses, reduced infarct size, and improved cardiac function. IV administration of recombinant TSG-6 also reduced inflammatory responses and reduced infarct size. The results suggest improvements in animal models and patients after IV infusions of MSCs are at least in part explained by activation of MSCs to secrete TSG-6.

Publication Title

Intravenous hMSCs improve myocardial infarction in mice because cells embolized in lung are activated to secrete the anti-inflammatory protein TSG-6.

Sample Metadata Fields

Specimen part, Disease

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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