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accession-icon GSE65464
Changes in global gene expression in SIN1 knock-out murine epithelial fibroblasts
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
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Description

RNA from wt and SIN1 knock-out MEF cell lines were compared

Publication Title

mTORC2 Responds to Glutamine Catabolite Levels to Modulate the Hexosamine Biosynthesis Enzyme GFAT1.

Sample Metadata Fields

Specimen part

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accession-icon GSE18348
Induction of intestinal Th17 cells by segmented filamentous bacteria
  • organism-icon Mus musculus
  • sample-icon 14 Downloadable Samples
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Description

The gastrointestinal tract of mammals is inhabited by hundreds of distinct species of commensal microorganisms that exist in a mutualistic relationship with the host. The process by which the commensal microbiota influence the host immune system is poorly understood. We show here that colonization of the small intestine of mice with a single commensal microbe, segmented filamentous bacterium (SFB), is sufficient to induce the appearance of CD4+ T helper cells that produce IL-17 and IL-22 (Th17 cells) in the lamina propria. SFB adhere tightly to the surface of epithelial cells in the terminal ileum of mice with Th17 cells but are absent from mice that have few Th17 cells. Colonization with SFB was correlated with increased expression of genes associated with inflammation, anti-microbial defenses, and tissue repair, and resulted in enhanced resistance to the intestinal pathogen Citrobacter rodentium. Control of Th17 cell differentiation by SFB may thus establish a balance between optimal host defense preparedness and potentially damaging T cell responses. Manipulation of this commensal-regulated pathway may provide new opportunities for enhancing mucosal immunity and treating autoimmune disease.

Publication Title

Induction of intestinal Th17 cells by segmented filamentous bacteria.

Sample Metadata Fields

Specimen part

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accession-icon GSE10167
Microarray Analysis of Treacher Collins Syndrome
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

The object of this study was to identify genes transcriptionally upregulated and downregulated in response to Tcof1 haploin-sufficiency during mouse embryogensis

Publication Title

Prevention of the neurocristopathy Treacher Collins syndrome through inhibition of p53 function.

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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