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accession-icon GSE13125
Identification of PU.1 target genes by expression profiling of PUER cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

PU.1 is a key transcription factor for macrophage differentiation. Novel PU.1 target genes were identified by mRNA profiling of PU.1-deficient progenitor cells (PUER) before and after PU.1 activation. We used two different types of Affymetrix DNA-microarrays (430 2.0 arrays and ST 1.0 exon arrays) to characterize the global PU.1-regulated transcriptional program underlying the early processes of macrophage differentiation.

Publication Title

Transcriptomic profiling identifies a PU.1 regulatory network in macrophages.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE34215
Knockout of GPx4 gene in mouse keratinocyte
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

Comparative analysis of gene expression in cultured primary keratinocytes isolated from newborn control (K14-cre; GPx4fl/+) and knockout (K14-cre; GPx4fl/fl) mice.

Publication Title

Targeted disruption of glutathione peroxidase 4 in mouse skin epithelial cells impairs postnatal hair follicle morphogenesis that is partially rescued through inhibition of COX-2.

Sample Metadata Fields

Specimen part

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accession-icon GSE39562
Immortalized clonal brown, beige and white adipose cell lines
  • organism-icon Mus musculus
  • sample-icon 26 Downloadable Samples
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Description

Brown fat generates heat via the mitochondrial uncoupling protein UCP1, defending against hypothermia and obesity. Recent data suggest that there are two distinct types of brown fat: classical brown fat derived from a myf-5 cellular lineage and UCP1-positive cells that emerge in white fat from a non-myf-5 lineage. Here, we report the isolation of beige cells from murine white fat depots.

Publication Title

Beige adipocytes are a distinct type of thermogenic fat cell in mouse and human.

Sample Metadata Fields

Cell line

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accession-icon GSE26809
FMRP Associates with Polyribosomes
  • organism-icon Mus musculus
  • sample-icon 26 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE26745
Comparison of total and polyribosome-associated mRNA levels in male Fmr1 KO mice and male WT littermates
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
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Description

The Fragile X Mental Retardation Protein, FMRP, is thought to regulate the translation of a specific set of neuronal mRNAs on polyribosomes. Therefore, we prepared polyribosomes on sucrose gradients and purified mRNA specifically from these fractions, as well as the total mRNA levels, to determine whether a set of mRNAs might be changed in its % association with polyribosomes in the absence of FMRP in the KO mouse model.

Publication Title

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism.

Sample Metadata Fields

Sex, Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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