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accession-icon GSE26697
Transcriptomic response of murine liver to severe injury and hemorrhagic shock
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Transcriptomic response of murine liver to severe injury and hemorrhagic shock: a dual-platform microarray analysis.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE26695
Transcriptomic response of murine liver to severe injury and hemorrhagic shock: Affymetrix portion of dual platform
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
  • Technology Badge Icon

Description

A dual platform microarray analysis was used to characterize the temporal transcriptomic response in the mouse liver following trauma and hemmorhagic shock

Publication Title

Transcriptomic response of murine liver to severe injury and hemorrhagic shock: a dual-platform microarray analysis.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE19729
Interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication
  • organism-icon Mus musculus
  • sample-icon 14 Downloadable Samples
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Description

Full title: Genomics based analysis of interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication

Publication Title

Genomics based analysis of interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication.

Sample Metadata Fields

Specimen part

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accession-icon GSE34765
Transcriptomic analysis of the cerebellum of daDREAM mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

DREAM (downstream regulatory element antagonist modulator) is a Ca2+-binding protein that binds DNA and represses transcription in a Ca2+-dependent manner. Previous studies have shown a role for DREAM in cerebellar function regulating the expression of the sodium/calcium exchanger3 (NCX3) in cerebellar granules to control Ca2+ homeostasis and survival of these neurons. To achieve a more global view of the genes regulated by DREAM in the cerebellum, we performed a genome-wide analysis in transgenic cerebellum expressing a Ca2+-insensitive/CREB-independent dominant active mutant DREAM (daDREAM). Our results indicate that DREAM is a major transcription factor in the cerebellum that regulates genes important for cerebellar development.

Publication Title

Reduced Mid1 Expression and Delayed Neuromotor Development in daDREAM Transgenic Mice.

Sample Metadata Fields

Specimen part

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accession-icon GSE30356
Expression data from FAK null mouse embryonic fibroblasts treated with endothelin-1
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
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Description

Endothelin-1 (ET-1) plays a critical role in connective tissue remodeling by fibroblasts during tissue repair and fibrosis. We investigated the molecular pathways in the transmission of ET-1 signals that lead to features of connective tissue remodeling, in particular the role of FAK (focal adhesion kinase).

Publication Title

Inhibition of focal adhesion kinase prevents experimental lung fibrosis and myofibroblast formation.

Sample Metadata Fields

Specimen part, Treatment

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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