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accession-icon GSE60058
Tfap2a dependnt cha
  • organism-icon Mus musculus
  • sample-icon 1 Downloadable Sample
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Description

Neo/null loss of Tfap2a in E10.5 mouse facial prominences

Publication Title

Tfap2a-dependent changes in mouse facial morphology result in clefting that can be ameliorated by a reduction in Fgf8 gene dosage.

Sample Metadata Fields

Specimen part

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accession-icon GSE15069
Inhibitor trials in chondrocytes - MAS 5.0 normalization
  • organism-icon Mus musculus
  • sample-icon 15 Downloadable Samples
  • Technology Badge Icon

Description

Objectives: To identify similarities and differences in gene expression data in the MEK/ERK and PI3K pathways and to determine how histone modification affects these same pathways. Goal: To identify and functionally characterize novel targets of these signaling pathways in the context of chondrocyte differentiation.

Publication Title

Regulation of gene expression by PI3K in mouse growth plate chondrocytes.

Sample Metadata Fields

Specimen part

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accession-icon GSE106271
Treatment of insulin resistant 3T3-L1 adipose cells with MnTBAP
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
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Description

MnTBAP reversed insulin resistance without significant alteration to gene expression

Publication Title

The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes.

Sample Metadata Fields

Specimen part

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accession-icon GSE67358
Promotion of pancreatic cancer metastasis by mutant p53
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
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Description

The TP53 transcription factor is frequently mutated at later stages of epithelial cancers, indicating a possible role in their invasion and metastasis. Importantly, in most cases rather than a simple loss of function p53 mutation, point mutations of p53 accumulate at the protein level and may have dominant negative functions. This study analyses gene expression differences between mice harbouring p53 mutation who do and do not develop metastasis.

Publication Title

Targeting the LOX/hypoxia axis reverses many of the features that make pancreatic cancer deadly: inhibition of LOX abrogates metastasis and enhances drug efficacy.

Sample Metadata Fields

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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