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accession-icon GSE34765
Transcriptomic analysis of the cerebellum of daDREAM mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
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Description

DREAM (downstream regulatory element antagonist modulator) is a Ca2+-binding protein that binds DNA and represses transcription in a Ca2+-dependent manner. Previous studies have shown a role for DREAM in cerebellar function regulating the expression of the sodium/calcium exchanger3 (NCX3) in cerebellar granules to control Ca2+ homeostasis and survival of these neurons. To achieve a more global view of the genes regulated by DREAM in the cerebellum, we performed a genome-wide analysis in transgenic cerebellum expressing a Ca2+-insensitive/CREB-independent dominant active mutant DREAM (daDREAM). Our results indicate that DREAM is a major transcription factor in the cerebellum that regulates genes important for cerebellar development.

Publication Title

Reduced Mid1 Expression and Delayed Neuromotor Development in daDREAM Transgenic Mice.

Sample Metadata Fields

Specimen part

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accession-icon GSE17039
Expression Profiling of Early Myogenesis
  • organism-icon Mus musculus
  • sample-icon 48 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Analysis of early C2C12 myogenesis identifies stably and differentially expressed transcriptional regulators whose knock-down inhibits myoblast differentiation.

Sample Metadata Fields

Cell line, Time

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accession-icon GSE16992
Expression Profiling of Early Myogenesis - Affymetrix Dataset
  • organism-icon Mus musculus
  • sample-icon 48 Downloadable Samples
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Description

Analysis of Early Myogenesis Reveals an Extensive Set of Transcriptional Regulators Whose Knock-down Can Inhibit Differentiation

Publication Title

Analysis of early C2C12 myogenesis identifies stably and differentially expressed transcriptional regulators whose knock-down inhibits myoblast differentiation.

Sample Metadata Fields

Cell line, Time

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accession-icon GSE19836
A mouse Embryonic Stem Cell Bank for inducible overexpression of human chromosome 21 genes
  • organism-icon Mus musculus
  • sample-icon 32 Downloadable Samples
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Description

The HSA21-mES Cell Bank includes, in triplicate clones, thirty-two murine orthologs of HSA21 genes, which can be overexpressed in an inducible manner using the Tet-off system integrated in the Rosa26 locus.

Publication Title

A mouse embryonic stem cell bank for inducible overexpression of human chromosome 21 genes.

Sample Metadata Fields

Specimen part

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accession-icon GSE27516
Preclinical Models for Neuroblastoma: Establishing a Baseline for Treatment
  • organism-icon Mus musculus
  • sample-icon 16 Downloadable Samples
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Description

Here we characterize and optimize both systems to increase their utility for preclinical studies. We show that TH-MYCN mice develop tumors in the paraspinal ganglia, but not in the adrenal, with cellular and gene expression patterns similar to human NB. In addition, we present a new ultrasound guided, non-invasive orthotopic xenograft method. This injection technique is rapid, provides accurate targeting of the injected cells and leads to efficient engraftment. We also demonstrate that tumors can be detected, monitored and quantified prior to visualization using ultrasound, MRI and bioluminescence. Finally we develop and test a standard of care chemotherapy regimen. This protocol, which is based on current treatments for neuroblastoma, provides a baseline for comparison of new therapeutic agents.

Publication Title

Preclinical models for neuroblastoma: establishing a baseline for treatment.

Sample Metadata Fields

Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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