refine.bio
  • Search
      • Normalized Compendia
      • RNA-seq Sample Compendia
  • Docs
  • About
  • My Dataset
github link
Showing
of 17 results
Sort by

Filters

Technology

Platform

accession-icon GSE31938
Hypothalamus
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

These arrays contain data from hypthalamus tissue of nestin-Pex5 -/- male mice

Publication Title

Peroxisome deficiency but not the defect in ether lipid synthesis causes activation of the innate immune system and axonal loss in the central nervous system.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE32905
EMT inducers catalyze malignant transformation of mammary epithelial cells and drive tumorigenesis towards claudin-low tumors
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 17 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

EMT inducers catalyze malignant transformation of mammary epithelial cells and drive tumorigenesis towards claudin-low tumors in transgenic mice.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE32904
EMT inducers catalyze malignant transformation of mammary epithelial cells and drive tumorigenesis towards claudin-low tumors [mouse]
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon

Description

The newly identified claudin-low subtype of cancer is believed to represent the most primitive breast malignancies, having arisen from transformation of an early epithelial precursor with inherent stemness properties and metaplastic features. Challenging this hypothesis, we show both in vitro and in vivo that transcription factors inducing epithelial-mesenchymal transition can drive the development of claudin-low tumors from differentiated mammary epithelial cells, by playing a dual role in cell transformation and dedifferentiation.

Publication Title

EMT inducers catalyze malignant transformation of mammary epithelial cells and drive tumorigenesis towards claudin-low tumors in transgenic mice.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE107798
Comparative analysis of gene expression identifies distinct molecular signatures of bone marrow- and periosteal skeletal stem/progenitor cells
  • organism-icon Mus musculus
  • sample-icon 11 Downloadable Samples
  • Technology Badge Icon

Description

Genetic comparison between periosteal skeletal stem cells and bone marrow skeletal stem cells in mice

Publication Title

Comparative analysis of gene expression identifies distinct molecular signatures of bone marrow- and periosteal-skeletal stem/progenitor cells.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE42346
Expression data from murine bone marrow erythroid progenitor cells at two early stages of development.
  • organism-icon Mus musculus
  • sample-icon 14 Downloadable Samples
  • Technology Badge Icon

Description

This study was designed to define erythropoietin (EPO) regulated genes in murine bone marrow erythroid progenitor cells at two stages of development, designated E1, and E2. E1 cells correspond to CFUe- like progenitors, while E2 cells are proerythroblasts.

Publication Title

Defining an EPOR- regulated transcriptome for primary progenitors, including Tnfr-sf13c as a novel mediator of EPO- dependent erythroblast formation.

Sample Metadata Fields

Sex, Specimen part, Treatment

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples
accession-icon GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SAGA co-activator has been implicated in the regulation of a smal subset of genes in budding yeast in transcriptomic analyses performed in steady-state levels of RNA.

Publication Title

SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Sample Metadata Fields

Genetic information

View Samples

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

BSD 3-Clause LicensePrivacyTerms of UseContact