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accession-icon GSE71090
Expression data from isogenic Pten WT or KO mouse T-ALLs
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Metabolic reprogramming induces resistance to anti-NOTCH1 therapies in T cell acute lymphoblastic leukemia.

Sample Metadata Fields

Specimen part

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accession-icon GSE71087
Expression data from isogenic Pten WT or KO mouse T-ALLs treated with DBZ or DMSO
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
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Description

To investigate the underlying mechanisms mediating resistance to NOTCH inhibition in Pten-null T-ALL tumor cells we performed gene expression profiling of isogenic Pten-positive and Pten-deleted leukemia lymphoblasts after acute treatment with DBZ in vivo.

Publication Title

Metabolic reprogramming induces resistance to anti-NOTCH1 therapies in T cell acute lymphoblastic leukemia.

Sample Metadata Fields

Specimen part

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accession-icon GSE64750
Lung expression data from highly pathogenic H5N1 virus infected and uninfected mice
  • organism-icon Mus musculus
  • sample-icon 22 Downloadable Samples
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Description

Susceptible and Resistant mouse strain, e.g. DBA/2J and C57BL/6J respectively, were inoculated with a highly pathogenic H5N1 influenza A virus (A/Hong Kong/213/2003) for 72 hours.

Publication Title

Host genetic variation affects resistance to infection with a highly pathogenic H5N1 influenza A virus in mice.

Sample Metadata Fields

Sex

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accession-icon GSE48646
Compare RNA profile between LPS+CPN and LPS+CPN+GGOH treated peritoneal macrophages
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

To find out genes regulated by geranylgeraniol (GGOH) treatment in peritoneal macrophage, we compared gene expression of cells treated with 200ng ml LPS and 250 micromolar compactin versus 200ng ml LPS, 250 micromolar compactin and 100micromolar GGOH.

Publication Title

Sufficient production of geranylgeraniol is required to maintain endotoxin tolerance in macrophages.

Sample Metadata Fields

Specimen part, Treatment

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accession-icon GSE21063
NFATc1 controls the survival, function and suppressive capacity of B lymphocytes upon B cell receptor stimulation
  • organism-icon Mus musculus
  • sample-icon 20 Downloadable Samples
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Description

Triggering of B cell receptors (BCR) induces a massive synthesis of NFATc1 in splenic B cells. By inactivating the Nfatc1 gene and re-expressing NFATc1 we show that NFATc1 levels are critical for the survival of splenic B cells upon BCR stimulation. NFATc1 ablation led to decreased BCR-induced Ca++ flux and proliferation of splenic B cells, increased apoptosis and suppressed germinal centre formation and immunoglobulin class switch by T cell-independent antigens. By controlling IL-10 synthesis in B cells, NFATc1 supported the proliferation and IL-2 synthesis of T cells in vitro and appeared to contribute to the mild clinical course of Experimental Autoimmune Encephalomyelitis in mice bearing NFATc1-/- B cells. These data indicate NFATc1 as a key factor controlling B cell function.

Publication Title

NFATc1 affects mouse splenic B cell function by controlling the calcineurin--NFAT signaling network.

Sample Metadata Fields

Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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