refine.bio
  • Search
      • Normalized Compendia
      • RNA-seq Sample Compendia
  • Docs
  • About
  • My Dataset
github link
Showing
of 16 results
Sort by

Filters

Technology

Platform

accession-icon GSE39388
Distinct transcriptional programs controlled by ERG and ETV1 in prostate cells
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 41 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients.

Sample Metadata Fields

Specimen part, Cell line, Treatment

View Samples
accession-icon GSE39355
Expression profiling of mouse primary prostate luminal cells from WT and T-ETV1 mice, which contains human ETV1 cDNA under the endogenous Tmprss2 promoter.
  • organism-icon Mus musculus
  • sample-icon 7 Downloadable Samples
  • Technology Badge Icon

Description

Chromosomal rearrangements involving ETS factors, ERG and ETV1, occur frequently in prostate cancer. We here examine mouse prostate cells from WT mice with s with T-ETV1 mice, which contains express the truncated human ETV1 under the endogenous Tmprss2 promoter. ETV1 expression can be tracked by GFP expression.

Publication Title

ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE31938
Hypothalamus
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

These arrays contain data from hypthalamus tissue of nestin-Pex5 -/- male mice

Publication Title

Peroxisome deficiency but not the defect in ether lipid synthesis causes activation of the innate immune system and axonal loss in the central nervous system.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE12075
The impact of microRNAs on protein output
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 20 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

The impact of microRNAs on protein output.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE11973
Wild-type cultured neutrophils versus miR-223 null cultured neutrophils
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

This array analysis is to study the regulation of target messages expression in in vitro cultured murine neutrophils versus miR-223 null neutrophils. Culture media was SILAC-IMDM for MS analysis.

Publication Title

The impact of microRNAs on protein output.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE12001
Wild-type neutrophils and miR-223 null neutrophils
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

This array analysis is to study the regulation of target messages expression in murine neutrophils versus miR-223 null neutrophils.

Publication Title

The impact of microRNAs on protein output.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE108208
Expression data from cells located at the invasive front and in the tumor mass of mouse cervical squamous cell carcinomas
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon

Description

Cells located at the invasive front and in the tumor mass of mouse cervical squamous cell carcinomas were isolated by laser microdissection from hematoxylin-stained HPV/E2 sections. 7 months old HPV/E2 mice treated with oestrogen develop invasive cervical squamous cell carcinomas. This model recapitulates human invasive cervical neoplasias.

Publication Title

Inflammatory Cytokines Induce Podoplanin Expression at the Tumor Invasive Front.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE28231
Dendritic cell maturation by proinflammatory TNF or pathogenic Trypanosoma brucei antigens instruct similar T helper-2 cell responses in murine models of autoimmunity and asthma
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon

Description

Background

Publication Title

Similar inflammatory DC maturation signatures induced by TNF or Trypanosoma brucei antigens instruct default Th2-cell responses.

Sample Metadata Fields

Specimen part, Treatment

View Samples
accession-icon GSE25640
Expression data from wild type or FIZZ2 knockout murine lungs
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon

Description

To study the possible fibrotic role of FIZZ2, bleomycin was used to induce pulmonary fibrosis in wild type and FIZZZ2 knockout mice, lungs were then harvested and processed for RNA isolation.

Publication Title

FIZZ2/RELM-β induction and role in pulmonary fibrosis.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE74156
An integrated systems biology approach identifies positive cofactor 4 as a pluripotency regulatory factor
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency.

Sample Metadata Fields

Sex, Specimen part

View Samples

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

BSD 3-Clause LicensePrivacyTerms of UseContact